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Hessah A. Alraqibah

Lecturer

Lecturer- CS department /halraqibah@ksu.edu.sa

علوم الحاسب والمعلومات
Building 6 -3rd floor , T136
المنشورات
ورقة مؤتمر
2013

Extended Component-Based Motif Localization for Interacting RNA Structures

Alraqibah,Hessah, . 2013

RNA molecules fold where pairs of bases bond to make RNA secondary structure. Most of these structures are conserved, they commonly occur in an RNA sequence and are called structural motifs. Searching for a specific structural motif (including interacting motifs) in RNA provides valuable information to biologists. In this paper, we extend the work done in [4] by proposing an extended component- based representation for interacting structural motifs. The proposed representation allows more flexibility in defining structural motifs. We update the data structure that was used for storing sequences such that it can handle sequences more eciently. The update allows the return of exact locations of motifs in sequences instead of the number of occurrences. We also update the match algorithm such that it can eciently handle the updated representation for both motifs and sequences. 

نوع عمل المنشور
Master
مدينة النشر
Charlotte, NC, USA.
موقع المؤتمر
Charlotte, US
اسم المؤتمر
ISBRA
الصفحات
145-150
مزيد من المنشورات