IUPACpal: efficient identification of inverted repeats in IUPAC-encoded DNA sequences

An inverted repeat is a DNA sequence followed downstream by its reverse complement, potentially with a gap in the centre. Inverted repeats are found in both prokaryotic and eukaryotic genomes and they have been linked with countless possible functions. Many international consortia provide a comprehensive description of common genetic variation making alternative sequence representations, such as IUPAC encoding, necessary for leveraging the full potential of such broad variation datasets.

Publication Work Type

PhD

Publisher Name

BMC Bioinformatics

Volume Number

Issue Number

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LMPSeizNet: A Lightweight Multiscale Pyramid Convolutional Neural Network for Epileptic Seizure Detection on EEG Brain Signals

Epilepsy is a chronic disease and one of the most common neurological disorders worldwide. Electroencephalogram (EEG) signals are widely used to detect epileptic seizures, which provide…

by Arwa Alsaadan, Mai Alzamel and Muhammad Hussain

2024

Published in:

Mathematics

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by Mai Alzamel, Hamza Ali Rizvi, Najwa Altwaijry, Isra Al-Turaiki

2024

Published in:

techscience

Dynamic IoT malware detection in Android systems using profile hidden Markov models

by Norah Abanmi, Heba Kurdi and Mai Alzamel

2022

Published in:

Applied Sciences

Dr. Mai Alzamel

IUPACpal: efficient identification of inverted repeats in IUPAC-encoded DNA sequences